How does bookmarking work when overwriting a Flash project with an Flash/HTML5 project?

I need to overwrite a project on our LMS that was published in Flash only--I did not select the HTML5 option when publishing.  Now, we our converting all of our projects to Flash/HTML5 publishing. 

There are some users that are currently taking a course on the LMS that I need to replace with the HTML5 output.  Does anyone know if this will affect the bookmarking for the current users if the project files are replaced?

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