Different results with html5 and flash

Hello People, need some help to fix a calculator.

Im using a javascript to perform the calculations, the user needs to provide the input values which are then calculated by the javascript, is it possible to run two different javascripts - one for the html5 player and the other for flash player,  as the same java script gives different answers if used by both. if yes how can i set up the javascripts to run based on the player

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