Is it possible to preserve students' progress if I need to replace the course file?

Like a lot of folks, we're working on getting rid of Flash. I developed a course a few years ago using Articulate Studio '13. It's a relatively large course:  approx 16 hours, and users get CE credits for it. Users answer reflective questions (ungraded) throughout the course, and they only get a complete if they work through the entire course.

I recently re-built the course by importing into Storyline and redoing any Engage Interactions from scratch. Now it's all HTML5 and works great. I'm ready to replace the course's old .zip file with the new one, but for any students in middle of the course, I believe it'll reset their progress. 

Is there a way to preserve their progress?

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