Publish as one File?

I posted a question earlier today and am posting again, with a different title, in hopes of sparking a conversation. I'm determined to figure out what my options are.

Original Post

I am having issues with getting content to play on the CMS/LMS that I'm working with. It's not an official LMS, so the server setup isn't traditional. Is it possible to publish to one SWF file? 

Any advice is welcomed!

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